HL_4V4A_034

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CUGGAGAUACG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_034 not in the Motif Atlas

Homologous match to HL_7A0S_002

Geometric discrepancy: 0.3623

The information below is about HL_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50418.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V4A|1|B0|C|85
4V4A|1|B0|U|86
4V4A|1|B0|G|87
4V4A|1|B0|G|88
4V4A|1|B0|A|89
4V4A|1|B0|G|90
4V4A|1|B0|A|91
4V4A|1|B0|U|92
4V4A|1|B0|A|93
4V4A|1|B0|C|94
4V4A|1|B0|G|95

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BR

50S ribosomal protein L23

Chain BS

50S ribosomal protein L24

Chain BW

50S ribosomal protein L29