HL_4V4A_041

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4V4A|1|B0|G|319, 4V4A|1|B0|A|320, 4V4A|1|B0|A|322

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_041 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.3229

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

4V4A|1|B0|C|316
4V4A|1|B0|U|317
4V4A|1|B0|G|318
4V4A|1|B0|G|319
4V4A|1|B0|A|320
4V4A|1|B0|A|321
4V4A|1|B0|A|322
4V4A|1|B0|G|323

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BQ

50S ribosomal protein L22

Chain BS

50S ribosomal protein L24