HL_4V4A_045

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4V4A|1|B0|G|424

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_045 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1144

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V4A|1|B0|G|423
4V4A|1|B0|G|424
4V4A|1|B0|A|425
4V4A|1|B0|C|426
4V4A|1|B0|C|427
4V4A|1|B0|A|428
4V4A|1|B0|C|429
4V4A|1|B0|C|430

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S ribosomal protein L1P