HL_4V4A_082

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V4A|1|B0|G|2229

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_082 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.223

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V4A|1|B0|C|2227
4V4A|1|B0|U|2228
4V4A|1|B0|G|2229
4V4A|1|B0|G|2230
4V4A|1|B0|G|2231
4V4A|1|B0|G|2232
4V4A|1|B0|C|2233
4V4A|1|B0|G|2234
4V4A|1|B0|G|2235

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BK

50S ribosomal protein L16

Chain BU

50S ribosomal protein L27