HL_4V4A_083

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

4V4A|1|B0|A|2247, 4V4A|1|B0|C|2254

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_083 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.2707

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4A|1|B0|C|2243
4V4A|1|B0|C|2244
4V4A|1|B0|A|2245
4V4A|1|B0|A|2246
4V4A|1|B0|A|2247
4V4A|1|B0|A|2248
4V4A|1|B0|U|2249
4V4A|1|B0|G|2250
4V4A|1|B0|U|2251
4V4A|1|B0|A|2252
4V4A|1|B0|A|2253
4V4A|1|B0|C|2254
4V4A|1|B0|G|2255

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BK

50S ribosomal protein L16

Chain BU

50S ribosomal protein L27