HL_4V4A_089

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

4V4A|1|B0|U|2456

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_089 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.3529

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4A|1|B0|A|2450
4V4A|1|B0|G|2451
4V4A|1|B0|U|2452
4V4A|1|B0|C|2453
4V4A|1|B0|C|2454
4V4A|1|B0|A|2455
4V4A|1|B0|U|2456
4V4A|1|B0|A|2457
4V4A|1|B0|U|2458

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S ribosomal protein L36