HL_4V4A_112

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

4V4A|1|B0|A|2013, 4V4A|1|B0|A|2014, 4V4A|1|B0|G|2015

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_112 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.3755

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4A|1|B0|G|2010
4V4A|1|B0|U|2011
4V4A|1|B0|A|2012
4V4A|1|B0|A|2013
4V4A|1|B0|A|2014
4V4A|1|B0|G|2015
4V4A|1|B0|A|2016
4V4A|1|B0|U|2017
4V4A|1|B0|G|2018
4V4A|1|B0|C|2019

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BB

50S ribosomal protein L3