HL_4V4G_170

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GUCAAUGC

Length

8 nucleotides

Bulged bases

4V4G|1|DB|C|1648, 4V4G|1|DB|U|1651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_170 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.5262

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V4G|1|DB|G|1646
4V4G|1|DB|U|1647
4V4G|1|DB|C|1648
4V4G|1|DB|A|1649
4V4G|1|DB|A|1650
4V4G|1|DB|U|1651
4V4G|1|DB|G|1652
4V4G|1|DB|C|1653

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains