HL_4V4G_337

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

4V4G|1|HB|G|340, 4V4G|1|HB|A|341, 4V4G|1|HB|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_337 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.4601

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V4G|1|HB|G|338
4V4G|1|HB|U|339
4V4G|1|HB|G|340
4V4G|1|HB|A|341
4V4G|1|HB|G|342
4V4G|1|HB|A|343
4V4G|1|HB|G|344
4V4G|1|HB|U|345
4V4G|1|HB|C|346

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain HT

50S ribosomal protein L22

Chain HV

50S ribosomal protein L24