Motif HL_27670.3 Version HL_27670.3 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4FRG_003 | 4FRG | 0.3717 | 3 | T-loop with unstacked turn | B | cobalamin riboswitch aptamer domain | G | 58 | U | 59 | A | 63 | C | 64 | U | 65 | C | 66 | cWW | tWH |
| 2 | HL_6DN2_004 | 6DN2 | 0.3799 | 2 | T-loop with unstacked turn | Y | RNA (56-MER) | G | 88 | U | 89 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH |
| 3 | HL_3F2X_005 | 3F2X | 0.3946 | 2 | T-loop with unstacked turn | X | FMN riboswitch | G | 88 | U | 89 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH |
| 4 | HL_3F2X_002 | 3F2X | 0.2783 | 2 | T-loop with unstacked turn | X | FMN riboswitch | G | 36 | U | 37 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH |
| 5 | HL_6DN2_002 | 6DN2 | 0.2467 | 2 | T-loop with unstacked turn | X | RNA RIBOSWITCH | G | 36 | U | 37 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH |
| 6 | HL_8P9A_119 | 8P9A | 0.1308 | 3 | T-loop with unstacked turn | AR | LSU rRNA | G | 216 | U | 217 | A | 221 | A | 222 | U | 223 | C | 224 | cWW | tWH |
| 7 | HL_8OI5_007 | 8OI5 | 0.1285 | 3 | T-loop with unstacked turn (H) | 1 | LSU rRNA | G | 215 | U | 216 | A | 220 | A | 221 | U | 222 | C | 223 | cWW | tWH |
| 8 | HL_9DFE_011 | 9DFE | 0.1014 | 3 | T-loop with unstacked turn | 1A | LSU rRNA | G | 327 | U | 328 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH |
| 9 | HL_4V9F_012 | 4V9F | 0.1017 | 3 | T-loop with unstacked turn | 0 | LSU rRNA | G | 334 | U | 335 | A | 339 | A | 340 | C | 341 | C | 342 | cWW | tWH |
| 10 | HL_9AXU_007 | 9AXU | 0.0774 | 3 | T-loop with unstacked turn (H) | 2 | LSU rRNA | G | 223 | U | 224 | A | 228 | A | 229 | C | 230 | C | 231 | cWW | tWH |
| 11 | HL_9E6Q_012 | 9E6Q | 0.0000 | 3 | T-loop with unstacked turn (H) | 1 | LSU rRNA | G | 355 | U | 356 | A | 360 | G | 361 | C | 362 | C | 363 | cWW | tWH |
| 12 | HL_8B0X_043 | 8B0X | 0.0634 | 3 | T-loop with unstacked turn (H) | a | LSU rRNA | G | 327 | U | 328 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH |
| 13 | HL_4WF9_012 | 4WF9 | 0.1351 | 3 | T-loop with unstacked turn | X | LSU rRNA | G | 370 | U | 371 | A | 375 | A | 376 | U | 377 | C | 378 | cWW | ntWH |
| 14 | HL_8GLP_007 | 8GLP | 0.4599 | 3 | T-loop with unstacked turn (H) | L5 | LSU rRNA | G | 230 | U | 231 | A | 235 | G | 236 | G | 237 | C | 238 | cWW | tWH |
| 15 | HL_7A0S_012 | 7A0S | 0.4831 | 3 | T-loop with unstacked turn | X | LSU rRNA | G | 338 | U | 339 | A | 343 | G | 344 | U | 345 | C | 346 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAGAGUC | 2 |
| GUAUAGUC | 2 |
| GUGAGAAUC | 2 |
| GUUAUACUC | 1 |
| GUGAAAGCC | 1 |
| GUGACAACC | 1 |
| GUGAGAACC | 1 |
| GUGAUAGCC | 1 |
| GUGACAGCC | 1 |
| GUAAUAAUC | 1 |
| GUGUGAGGC | 1 |
| GUGAGAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGAGU | 2 |
| UAUAGU | 2 |
| UGAGAAU | 2 |
| UUAUACU | 1 |
| UGAAAGC | 1 |
| UGACAAC | 1 |
| UGAGAAC | 1 |
| UGAUAGC | 1 |
| UGACAGC | 1 |
| UAAUAAU | 1 |
| UGUGAGG | 1 |
| UGAGAGU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop with unstacked turn (10)
- T-loop with unstacked turn (H) (5)
- Basepair signature
- cWW-tWH-F-F
- Heat map statistics
- Min 0.06 | Avg 0.30 | Max 0.61
Coloring options: