HL_4V4H_149

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4V4H|1|DB|G|386, 4V4H|1|DB|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4H_149 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1472

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V4H|1|DB|A|382
4V4H|1|DB|C|383
4V4H|1|DB|A|384
4V4H|1|DB|C|385
4V4H|1|DB|G|386
4V4H|1|DB|U|387
4V4H|1|DB|G|388
4V4H|1|DB|G|389
4V4H|1|DB|U|390
4V4H|1|DB|A|391
4V4H|1|DB|U|392

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DZ

50S RIBOSOMAL PROTEIN L31