HL_4V4I_005

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_005 not in the Motif Atlas

Homologous match to HL_4WF9_002

Geometric discrepancy: 0.5101

The information below is about HL_4WF9_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_77600.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V4I|1|w|C|87
4V4I|1|w|G|88
4V4I|1|w|G|89
4V4I|1|w|U|90
4V4I|1|w|A|91
4V4I|1|w|G|92
4V4I|1|w|C|93
4V4I|1|w|G|94
4V4I|1|w|G|95

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain S

50S ribosomal protein L24

Chain W

50S ribosomal protein L29