HL_4V4I_027

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

4V4I|1|w|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_027 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.4096

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4V4I|1|w|U|779
4V4I|1|w|G|780
4V4I|1|w|A|781
4V4I|1|w|A|782
4V4I|1|w|A|783
4V4I|1|w|A|784
4V4I|1|w|G|785

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2