HL_4V4I_035

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_035 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3527

The information below is about HL_2CZJ_007

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_53845.3

Basepair signature

cWW-tSH

Number of instances in this motif group

9

Unit IDs

4V4I|1|w|C|1222
4V4I|1|w|G|1223
4V4I|1|w|C|1224
4V4I|1|w|G|1225
4V4I|1|w|A|1226
4V4I|1|w|G|1227

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21