HL_4V4I_044

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V4I|1|w|A|1616, 4V4I|1|w|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_044 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.4809

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V4I|1|w|C|1612
4V4I|1|w|G|1613
4V4I|1|w|A|1614
4V4I|1|w|C|1615
4V4I|1|w|A|1616
4V4I|1|w|C|1617
4V4I|1|w|A|1618
4V4I|1|w|G|1619

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain Q

50S ribosomal protein L22

Chain Z

50S ribosomal protein L34