HL_4V4I_049

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases (A, C, G, U)

1780A, 1781C, 1782C, 1786A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_049 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.2123

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V4I|1|w|U|1777
4V4I|1|w|U|1778
4V4I|1|w|U|1779
4V4I|1|w|A|1780
4V4I|1|w|C|1781
4V4I|1|w|C|1782
4V4I|1|w|A|1783
4V4I|1|w|A|1784
4V4I|1|w|A|1785
4V4I|1|w|A|1786
4V4I|1|w|A|1787

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain Z

50S ribosomal protein L34