HL_4V4I_065

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4V4I|1|w|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_065 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.3962

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

4V4I|1|w|U|2528
4V4I|1|w|G|2529
4V4I|1|w|A|2530
4V4I|1|w|A|2531
4V4I|1|w|G|2532
4V4I|1|w|A|2533
4V4I|1|w|A|2534
4V4I|1|w|G|2535

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain b

50S ribosomal protein L36