HL_4V4I_086

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_086 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.3916

The information below is about HL_5J7L_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

4V4I|1|y|C|379
4V4I|1|y|G|380
4V4I|1|y|C|381
4V4I|1|y|A|382
4V4I|1|y|A|383
4V4I|1|y|G|384

Current chains

Chain y

16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain q

30S ribosomal protein S16