HL_4V4I_100

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4I_100 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.3715

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V4I|1|y|C|1076
4V4I|1|y|G|1077
4V4I|1|y|U|1078
4V4I|1|y|G|1079
4V4I|1|y|A|1080
4V4I|1|y|G|1081

Current chains

Chain y

16S SMALL SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain c

30S ribosomal protein S2

Chain f

30S ribosomal protein S5