HL_4V4I_120
3D structure
- PDB id
- 4V4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.71 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4I_120 not in the Motif Atlas
- Homologous match to HL_5J8B_118
- Geometric discrepancy: 0.3206
- The information below is about HL_5J8B_118
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 54
Unit IDs
4V4I|1|z|A|31
4V4I|1|z|PSU|32
4V4I|1|z|U|33
4V4I|1|z|G|34
4V4I|1|z|A|35
4V4I|1|z|A|36
4V4I|1|z|MIA|37
4V4I|1|z|A|38
4V4I|1|z|PSU|39
Current chains
- Chain z
- P-site PHE-tRNA
Nearby chains
- Chain 0
- Transfer RNA; tRNA
- Chain 1
- MRNA
- Chain j
- 30S ribosomal protein S9
- Chain n
- 30S ribosomal protein S13
- Chain y
- Small subunit ribosomal RNA; SSU rRNA
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