HL_4V4J_004
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- UGGCUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4J_004 not in the Motif Atlas
- Homologous match to HL_7RQB_001
- Geometric discrepancy: 0.5343
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V4J|1|w|U|59
4V4J|1|w|G|60
4V4J|1|w|G|61
4V4J|1|w|C|62
4V4J|1|w|U|63
4V4J|1|w|A|64
4V4J|1|w|C|65
4V4J|1|w|C|66
4V4J|1|w|U|67
4V4J|1|w|G|68
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain R
- 50S ribosomal protein L23
- Chain W
- 50S ribosomal protein L29
- Chain Z
- 50S ribosomal protein L34
Coloring options: