HL_4V4J_006

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

4V4J|1|w|G|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_006 not in the Motif Atlas

Homologous match to HL_7A0S_003

Geometric discrepancy: 0.395

The information below is about HL_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V4J|1|w|G|123
4V4J|1|w|G|124
4V4J|1|w|G|125
4V4J|1|w|A|126
4V4J|1|w|A|127
4V4J|1|w|C|128

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain R

50S ribosomal protein L23

Chain Z

50S ribosomal protein L34