HL_4V4J_034

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_034 not in the Motif Atlas

Geometric match to HL_7RQB_043

Geometric discrepancy: 0.3663

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

4V4J|1|w|G|1171
4V4J|1|w|G|1173
4V4J|1|w|A|1174
4V4J|1|w|U|1175
4V4J|1|w|G|1176
4V4J|1|w|A|1177
4V4J|1|w|C|1178

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains