HL_4V4J_046

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V4J|1|w|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_046 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.2216

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

4V4J|1|w|C|1691
4V4J|1|w|U|1692
4V4J|1|w|U|1693
4V4J|1|w|C|1694
4V4J|1|w|G|1695
4V4J|1|w|G|1696

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain r

30S ribosomal protein S17

Chain y

Small subunit ribosomal RNA; SSU rRNA