HL_4V4J_058

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V4J|1|w|A|2268, 4V4J|1|w|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_058 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.255

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

4V4J|1|w|C|2264
4V4J|1|w|U|2265
4V4J|1|w|A|2266
4V4J|1|w|A|2267
4V4J|1|w|A|2268
4V4J|1|w|A|2269
4V4J|1|w|G|2270
4V4J|1|w|G|2271
4V4J|1|w|U|2272
4V4J|1|w|A|2273
4V4J|1|w|A|2274
4V4J|1|w|C|2275
4V4J|1|w|G|2276

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27