HL_4V4J_061
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CCUGCAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4J_061 not in the Motif Atlas
- Homologous match to HL_7A0S_056
- Geometric discrepancy: 0.4333
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_04259.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V4J|1|w|C|2355
4V4J|1|w|C|2356
4V4J|1|w|U|2357
4V4J|1|w|G|2358
4V4J|1|w|C|2359
4V4J|1|w|A|2360
4V4J|1|w|A|2361
4V4J|1|w|G|2362
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain J
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L27
- Chain a
- 50S ribosomal protein L35
Coloring options: