HL_4V4J_078

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CCAGA*G

Length

6 nucleotides

Bulged bases

4V4J|1|y|C|103

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_078 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.216

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V4J|1|y|C|102|||C
4V4J|1|y|C|103
4V4J|1|y|A|103|||A
4V4J|1|y|G|103|||B
4V4J|1|y|A|103|||A
*
4V4J|1|y|G|103|||B

Current chains

Chain y

16S RNA

Nearby chains

Chain u

30S ribosomal protein S20