3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4J_079 not in the Motif Atlas
Homologous match to HL_5J7L_003
Geometric discrepancy: 0.2648
The information below is about HL_5J7L_003
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

4V4J|1|y|G|158
4V4J|1|y|G|159
4V4J|1|y|A|160
4V4J|1|y|A|161
4V4J|1|y|A|162
4V4J|1|y|C|163

Current chains

Chain y
16S RNA

Nearby chains

Chain N
50S ribosomal protein L19
Chain u
30S ribosomal protein S20

Coloring options:


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