HL_4V4J_079

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4J_079 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.2648

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V4J|1|y|G|158
4V4J|1|y|G|159
4V4J|1|y|A|160
4V4J|1|y|A|161
4V4J|1|y|A|162
4V4J|1|y|C|163

Current chains

Chain y

16S RNA

Nearby chains

Chain N

50S ribosomal protein L19

Chain u

30S ribosomal protein S20