HL_4V4J_101
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GUUAAGUC
- Length
- 8 nucleotides
- Bulged bases
- 4V4J|1|y|G|1094
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4J_101 not in the Motif Atlas
- Homologous match to HL_6CZR_096
- Geometric discrepancy: 0.3675
- The information below is about HL_6CZR_096
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_77436.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
4V4J|1|y|G|1089
4V4J|1|y|U|1090
4V4J|1|y|U|1091
4V4J|1|y|A|1092
4V4J|1|y|A|1093
4V4J|1|y|G|1094
4V4J|1|y|U|1095
4V4J|1|y|C|1096
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain h
- 30S ribosomal protein S7
- Chain s
- 30S ribosomal protein S18
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