HL_4V4P_020

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

4V4P|1|AA|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_020 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3694

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

4V4P|1|AA|G|778
4V4P|1|AA|U|779
4V4P|1|AA|G|780
4V4P|1|AA|A|781
4V4P|1|AA|A|782
4V4P|1|AA|A|783
4V4P|1|AA|A|784
4V4P|1|AA|G|785
4V4P|1|AA|C|786

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2