HL_4V4P_045

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V4P|1|AA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_045 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2835

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V4P|1|AA|G|1949
4V4P|1|AA|G|1950
4V4P|1|AA|U|1951
4V4P|1|AA|A|1952
4V4P|1|AA|A|1953
4V4P|1|AA|G|1954
4V4P|1|AA|U|1955
4V4P|1|AA|U|1956
4V4P|1|AA|C|1957

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AN

50S ribosomal protein L14

Chain BA

Small subunit ribosomal RNA; SSU rRNA