HL_4V4P_050

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V4P|1|AA|A|2268, 4V4P|1|AA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_050 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.401

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

4V4P|1|AA|C|2264
4V4P|1|AA|U|2265
4V4P|1|AA|A|2266
4V4P|1|AA|A|2267
4V4P|1|AA|A|2268
4V4P|1|AA|A|2269
4V4P|1|AA|G|2270
4V4P|1|AA|G|2271
4V4P|1|AA|U|2272
4V4P|1|AA|A|2273
4V4P|1|AA|A|2274
4V4P|1|AA|C|2275
4V4P|1|AA|G|2276

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L27

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AP

50S ribosomal protein L16