HL_4V4P_055

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4V4P|1|AA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_055 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.2201

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V4P|1|AA|C|2404
4V4P|1|AA|G|2405
4V4P|1|AA|U|2406
4V4P|1|AA|G|2407
4V4P|1|AA|U|2408
4V4P|1|AA|G|2409
4V4P|1|AA|G|2410
4V4P|1|AA|A|2411
4V4P|1|AA|A|2412
4V4P|1|AA|G|2413

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L31

Chain AO

50S ribosomal protein L15