HL_4V4P_082

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

4V4P|1|BA|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_082 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.2176

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V4P|1|BA|G|617
4V4P|1|BA|C|618
4V4P|1|BA|U|619
4V4P|1|BA|C|620
4V4P|1|BA|A|621
4V4P|1|BA|A|622
4V4P|1|BA|C|623

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S4

Chain BS

30S ribosomal protein S16