HL_4V4P_102

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

4V4P|1|BB|C|56

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4P_102 not in the Motif Atlas

Homologous match to HL_4V90_034

Geometric discrepancy: 0.3752

The information below is about HL_4V90_034

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V4P|1|BB|G|53
4V4P|1|BB|U|54
4V4P|1|BB|U|55
4V4P|1|BB|C|56
4V4P|1|BB|G|57
4V4P|1|BB|A|58
4V4P|1|BB|U|59
4V4P|1|BB|C|60
4V4P|1|BB|C|61

Current chains

Chain BB

tRNA Phe (unmodified bases)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AP

50S ribosomal protein L16

Chain AV

50S general stress protein CTC (L25)