HL_4V4P_142
3D structure
- PDB id
- 4V4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of 70S ribosome with thrS operator and tRNAs.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- ACUGAAGAU
- Length
- 9 nucleotides
- Bulged bases
- 4V4P|1|BB|A|36
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4P_142 not in the Motif Atlas
- Homologous match to HL_4V9Q_214
- Geometric discrepancy: 0.3828
- The information below is about HL_4V9Q_214
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
4V4P|1|BB|A|31
4V4P|1|BB|C|32
4V4P|1|BB|U|33
4V4P|1|BB|G|34
4V4P|1|BB|A|35
4V4P|1|BB|A|36
4V4P|1|BB|G|37
4V4P|1|BB|A|38
4V4P|1|BB|U|39
Current chains
- Chain BB
- tRNA Phe (unmodified bases)
Nearby chains
- Chain B1
- thrS mRNA operator
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BO
- 30S ribosomal protein S12
- Chain BP
- 30S ribosomal protein S13
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