HL_4V4S_036
3D structure
- PDB id
- 4V4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.76 Å
Loop
- Sequence
- GACUGAA(YYG)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: YYG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4S_036 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.3436
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V4S|1|AW|G|30
4V4S|1|AW|A|31
4V4S|1|AW|C|32
4V4S|1|AW|U|33
4V4S|1|AW|G|34
4V4S|1|AW|A|35
4V4S|1|AW|A|36
4V4S|1|AW|YYG|37
4V4S|1|AW|A|38
4V4S|1|AW|PSU|39
4V4S|1|AW|C|40
Current chains
- Chain AW
- E-site tRNA (Phe)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AG
- 30S ribosomal protein S7
- Chain AK
- 30S ribosomal protein S11
- Chain AV
- Transfer RNA; tRNA
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