HL_4V4S_057
3D structure
- PDB id
- 4V4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.76 Å
Loop
- Sequence
- GAGUGAGAC
- Length
- 9 nucleotides
- Bulged bases
- 4V4S|1|BA|A|712|||A
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4S_057 not in the Motif Atlas
- Homologous match to HL_8VTW_021
- Geometric discrepancy: 0.5974
- The information below is about HL_8VTW_021
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
4V4S|1|BA|G|712
4V4S|1|BA|A|712|||A
4V4S|1|BA|G|713
4V4S|1|BA|U|714
4V4S|1|BA|G|715
4V4S|1|BA|A|716
4V4S|1|BA|G|717
4V4S|1|BA|A|718
4V4S|1|BA|C|719
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- 30S ribosomal protein S15
- Chain AQ
- 30S ribosomal protein S17
- Chain BR
- 50S ribosomal protein L17
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