HL_4V4S_067

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CCCGCGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4S_067 not in the Motif Atlas

Geometric match to HL_4WT8_135

Geometric discrepancy: 0.3706

The information below is about HL_4WT8_135

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.3

Basepair signature

cWW-cWS-F

Number of instances in this motif group

16

Unit IDs

4V4S|1|BA|C|1221
4V4S|1|BA|C|1222
4V4S|1|BA|C|1223
4V4S|1|BA|G|1224
4V4S|1|BA|C|1225
4V4S|1|BA|G|1226
4V4S|1|BA|A|1227
4V4S|1|BA|G|1228

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21