HL_4V4S_107

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GCGAAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4S_107 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2933

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V4S|1|AA|G|725
4V4S|1|AA|C|726
4V4S|1|AA|G|727
4V4S|1|AA|A|728
4V4S|1|AA|A|729
4V4S|1|AA|G|730
4V4S|1|AA|G|731
4V4S|1|AA|C|732

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal protein S15

Chain AR

30S ribosomal protein S18