HL_4V4S_126
3D structure
- PDB id
- 4V4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.76 Å
Loop
- Sequence
- UGGCUACCUG
- Length
- 10 nucleotides
- Bulged bases
- 4V4S|1|BA|G|60, 4V4S|1|BA|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4S_126 not in the Motif Atlas
- Homologous match to HL_4WF9_067
- Geometric discrepancy: 0.4206
- The information below is about HL_4WF9_067
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V4S|1|BA|U|59
4V4S|1|BA|G|60
4V4S|1|BA|G|61
4V4S|1|BA|C|62
4V4S|1|BA|U|63
4V4S|1|BA|A|64
4V4S|1|BA|C|65
4V4S|1|BA|C|66
4V4S|1|BA|U|67
4V4S|1|BA|G|68
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L29
- Chain B7
- 50S ribosomal protein L34
- Chain BX
- 50S ribosomal protein L23
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