HL_4V4V_021

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

4V4V|1|AA|G|971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1524

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V4V|1|AA|G|963
4V4V|1|AA|A|964
4V4V|1|AA|U|965
4V4V|1|AA|G|966
4V4V|1|AA|C|967
4V4V|1|AA|A|968
4V4V|1|AA|A|969
4V4V|1|AA|C|970
4V4V|1|AA|G|971
4V4V|1|AA|C|972

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AJ

30S ribosomal subunit protein S10

Chain AU

Transfer RNA; tRNA

Chain AV

Transfer RNA; tRNA