HL_4V4V_034
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GACUGAAGAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4V_034 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.3297
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V4V|1|AU|G|30
4V4V|1|AU|A|31
4V4V|1|AU|C|32
4V4V|1|AU|U|33
4V4V|1|AU|G|34
4V4V|1|AU|A|35
4V4V|1|AU|A|36
4V4V|1|AU|G|37
4V4V|1|AU|A|38
4V4V|1|AU|U|39
4V4V|1|AU|C|40
Current chains
- Chain AU
- tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL
- 30S ribosomal subunit protein S12
- Chain AV
- Transfer RNA; tRNA
Coloring options: