HL_4V4V_047

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

4V4V|1|B0|A|227, 4V4V|1|B0|C|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_047 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.283

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V4V|1|B0|C|225
4V4V|1|B0|A|226
4V4V|1|B0|A|227
4V4V|1|B0|C|228
4V4V|1|B0|C|229
4V4V|1|B0|G|230

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L15