HL_4V4V_051

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCCGUGGUAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_051 not in the Motif Atlas

Geometric match to HL_4V9F_013

Geometric discrepancy: 0.1508

The information below is about HL_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91228.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V4V|1|B0|G|381
4V4V|1|B0|C|383
4V4V|1|B0|C|385
4V4V|1|B0|G|386
4V4V|1|B0|U|387
4V4V|1|B0|G|388
4V4V|1|B0|G|389
4V4V|1|B0|U|390
4V4V|1|B0|A|391
4V4V|1|B0|C|393

Current chains

Chain B0

23S ribosomal RNA

Nearby chains