HL_4V4V_055

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

4V4V|1|B0|U|545, 4V4V|1|B0|U|546, 4V4V|1|B0|A|547, 4V4V|1|B0|U|548, 4V4V|1|B0|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_055 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.289

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V4V|1|B0|C|543
4V4V|1|B0|C|544
4V4V|1|B0|U|545
4V4V|1|B0|U|546
4V4V|1|B0|A|547
4V4V|1|B0|U|548
4V4V|1|B0|G|549
4V4V|1|B0|C|550
4V4V|1|B0|G|551

Current chains

Chain B0

23S ribosomal RNA

Nearby chains