HL_4V4V_070

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUGUGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_070 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3524

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4V|1|B0|C|1221
4V4V|1|B0|U|1222
4V4V|1|B0|G|1223
4V4V|1|B0|U|1224
4V4V|1|B0|G|1225
4V4V|1|B0|A|1226
4V4V|1|B0|G|1227
4V4V|1|B0|G|1228

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BO

50S RIBOSOMAL PROTEIN L20