HL_4V4V_073

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

4V4V|1|B0|A|1367

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_073 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2695

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V4V|1|B0|C|1363
4V4V|1|B0|G|1364
4V4V|1|B0|A|1365
4V4V|1|B0|A|1366
4V4V|1|B0|A|1367
4V4V|1|B0|G|1368

Current chains

Chain B0

23S ribosomal RNA

Nearby chains