HL_4V4V_081

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCUCGCC

Length

7 nucleotides

Bulged bases

4V4V|1|B0|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_081 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.4543

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

4V4V|1|B0|G|1718
4V4V|1|B0|C|1728
4V4V|1|B0|U|1729
4V4V|1|B0|C|1730
4V4V|1|B0|G|1731
4V4V|1|B0|C|1732
4V4V|1|B0|C|1741

Current chains

Chain B0

23S ribosomal RNA

Nearby chains