HL_4V4V_085

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UUGCAAAG

Length

8 nucleotides

Bulged bases

4V4V|1|B0|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_085 not in the Motif Atlas

Geometric match to HL_4V9F_049

Geometric discrepancy: 0.1634

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V4V|1|B0|U|1864
4V4V|1|B0|U|1865
4V4V|1|B0|G|1869
4V4V|1|B0|C|1870
4V4V|1|B0|A|1871
4V4V|1|B0|A|1872
4V4V|1|B0|A|1877
4V4V|1|B0|G|1878

Current chains

Chain B0

23S ribosomal RNA

Nearby chains